Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs77113171 chr14:79029133 T/C 2.76E-7 363 19.83 21.1 5.7 KM Plot
LIHC rs77235794 chr6:143244450 A/C 4.38E-5 366 20.03 19.13 3.37 KM Plot
LIHC rs77241851 chr2:169081604 A/G 4.25E-6 368 19.6 21.32 13.87 KM Plot
LIHC rs77262931 chr11:119968674 G/A 1.25E-11 364 19.43 20.4 0.9 KM Plot
LIHC rs77344335 chr6:169948501 G/A 1.79E-5 366 19.87 18.8 4.27 KM Plot
LIHC rs77538740 chr2:37139527 T/C 1.25E-5 363 20.45 12.17 8.73 KM Plot
LIHC rs77746929 chr14:73581292 C/T 5.08E-6 364 20.5 13.3 4.93 KM Plot
LIHC rs77832235 chr11:107149713 T/C 9.22E-6 367 19.8 18.4 1.87 KM Plot
LIHC rs7792234 chr7:90307488 C/T 1.21E-5 361 14.32 18.6 20.27 KM Plot
LIHC rs77924495 chr2:37085940 C/G 1.52E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs77959607 chr11:119977373 T/G 6.7E-12 366 19.5 20.33 0.9 KM Plot
LIHC rs78022849 chr11:107139302 G/A 9.63E-6 367 19.83 18.78 1.87 KM Plot
LIHC rs78058526 chr2:37138350 G/C 1.04E-5 366 20.5 12.17 8.73 KM Plot
LIHC rs7807078 chr7:90301209 T/C 1.23E-5 362 14.23 19.42 20.27 KM Plot
LIHC rs78296514 chr2:37125493 G/A 8.8E-6 368 20.45 12.17 8.73 KM Plot